 | |||||||||||||||
 |
 |
 |
|
 |
|
 |
|
 |
|
 |
|
 |
|
 |
 |
AMBER Archive (2009)
Subject: [AMBER] MM_PBSA error
From: Jagdeesh C (jagc666_at_gmail.com)
Date: Thu Nov 26 2009 - 22:28:44 CST
- Previous message: Ilyas Yildirim: "Re: [AMBER] ligand parameterization"
- Next in thread: Jagdeesh C: "[AMBER] Re: MM_PBSA error"
- Reply: Jagdeesh C: "[AMBER] Re: MM_PBSA error"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]
Hello,
I am facing problem while trying to use MM_PBS calculations. The log has
been attached below.
I have already applied all the bugfixes but I still got the same error
message.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1418.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1391.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1373.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
Use of uninitialized value in multiplication (*) at
/root/AMBERTOOLS/amber10/src/mm_pbsa/mm_pbsa_statistics.pm line 1537.
No data for 0+0 MM BOND 0
Regards,
Jagdeesh
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
- Previous message: Ilyas Yildirim: "Re: [AMBER] ligand parameterization"
- Next in thread: Jagdeesh C: "[AMBER] Re: MM_PBSA error"
- Reply: Jagdeesh C: "[AMBER] Re: MM_PBSA error"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]
|
VU Home |
VUMC Home |
People Finder |
University Calendar
webmaster- modified on November 27, 2009 |