AMBER Archive (2009)

Subject: Re: [AMBER] standard way to upload a lipid bilayer

From: David Watson (dewatson_at_olemiss.edu)
Date: Sat Nov 21 2009 - 07:06:29 CST

On Nov 21, 2009, at 5:40 AM, Syed Kashif Zafar wrote:

> Hi all,
>
> I am new in using AMBER. I want to simulate a lipid bilayer and for this purpose i have read a lot of mails in amber archives. Due to which i am confused. Is there any standard way to upload a lipid bilayer on amber?
>

You may have a look at J Comput Chem 29: 24–37, 2008.
The authors have equilibrated DOPC and DMPC bilayers available at request.

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