AMBER Archive (2009)

Subject: Re:Re: [AMBER] read substrate into leap

From: sculiujl (sculiujl_at_163.com)
Date: Wed Nov 18 2009 - 19:12:13 CST

HI Jason,
Thank you for your help.I do as your advise.However,the leap programm cannot recongnize the residue name of substrate.

ÔÚ2009-11-19£¬"Jason Swails" <jason.swails_at_gmail.com> дµÀ£º
>Hello,
>
>When you use the loadpdb command in leap, it loads the coordinates
>automatically. For example
>
>l = loadpdb PDBFILE
>
>will load all of the atom types, atom names, and coordinates in PDBFILE in
>unit "l".
>
>The short version: coordinates are read in with the PDB file, you don't have
>to do anything extra.
>
>I hope this helps,
>Jason
>
>2009/11/18 sculiujl <sculiujl_at_163.com>
>
>>
>>
>> HI amber users,
>> I have a pdb file which contains the substrate .But I do not know how to
>> read the coordinates of substrate into leap.
>> Thank you in advance.
>> _______________________________________________
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>> AMBER_at_ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>
>
>--
>---------------------------------------
>Jason M. Swails
>Quantum Theory Project,
>University of Florida
>Ph.D. Graduate Student
>352-392-4032
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