AMBER Archive (2009)

Subject: Re: [AMBER] Installing AMBER 10 on Ubuntu 9.10 Karmic Koala

From: Jason Swails (jason.swails_at_gmail.com)
Date: Wed Nov 18 2009 - 13:00:09 CST

All this comment does is clean up the test directory after the tests have
finished (by removing the files that were created during the test). Leaving
the files won't hurt anything (unless you're incredibly short on disk
space). It's very strange that this is causing problems, as just about
every test case has an equivalent statement. Any simple explanation I could
have would throw an error message and not cause a hang (nor would the test
failure be exclusive to this case).

It may also be an OS instability, since I've read that the stability of 9.10
is reminiscent of Windows. If you have a machine with Ubuntu 9.04 or
earlier, does it work there? It works just fine on my machine (Ubuntu 9.04)
after I make the necessary modifications of /bin/sh and install csh and
whatnot.

Good luck!
Jason

On Wed, Nov 18, 2009 at 9:21 AM, Wallace Kunin <kunin_at_marshall.edu> wrote:

> I have figured out something more about the situation.
>
> When I keep the following line commented out, it works
>
> /bin/rm -f tgtmd.trj tgtmd.info tgtmd.restrt dummy
> >
>
> When I uncomment it again, it stalls when I run the script. It doesn't fail
> just stalls just like before.
>
> 1. Is it okay to leave this line commented out and just continue on with
> installation?
> 2. Why could this be happening?
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
> 

-- 
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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