AMBER Archive (2009)

Subject: [AMBER] Can I get an average trajectory?

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Hi Amber users,
  I am doing MD and have obtained several binary trajectory files. To eliminate the stochastic properties, I want to average these trajectory(all 0-500ps) into one 0-500ps trajectory. How can I do that? I think maybe it is not easy to average them in binary form. Maybe I can use Matlab to average them if they are in ascii form. So how to convert them into ascii form? Either of these two approaches will work, I think.
  BTW: I have tried "average" instruction and it will return a average structure, not a trajectory

  Thank you very much!

  Best,
  

cyk5056
2009-11-18

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• Previous message: cyk5056: "[AMBER] How to change the input matrix for "analyze matrix" instruction?"
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