AMBER Archive (2009)

Subject: Re: [AMBER] Installing AMBER 10 on Ubuntu 9.10 Karmic Koala

From: case (case_at_biomaps.rutgers.edu)
Date: Tue Nov 17 2009 - 11:29:42 CST

On Tue, Nov 17, 2009, Wallace Kunin wrote:

> This is Run.tgtmd in the $AMBERHOME/test/tgtmd/change_target.ntr directory
>
> I then commented the line you told me by adding a # in front of it
>
> This is what I did in the terminal then:
>
> > kunin_at_admin-laptop:~/amber10/test/tgtmd/change_target.ntr$ ./Run.tgtmd
> > SANDER: Targeted MD with changing target and restraints
> > diffing tgtmd.out.save with tgtmd.out
> > PASSED

Well! I doubt that it will be possible for someone on the mailing list to
psych out why it is passing now, compared to before. If you can figure what
changed, so that now things work, that might help in future similar
situations. But it seems unlikely that long-distance debugging will help
here.

...dac

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