AMBER Archive (2009)

Subject: Re: [AMBER] Segmentation fault in antechamber

From: albert albert (albertassonke_at_googlemail.com)
Date: Mon Nov 16 2009 - 10:23:02 CST

1- cpc.pdb is a phycocyanin pdb download from RCSB.
2- There is no output
3- If I remove "-c bcc"; I receive the same error.
4- I upgrade my system ubuntu 9.4 to 9.10, the compiler is gfortran.

Thanks

On Mon, Nov 16, 2009 at 4:53 PM, case <case_at_biomaps.rutgers.edu> wrote:

> On Mon, Nov 16, 2009, albert albert wrote:
>
> > I receive segmentation fault, after the launch of the following command
> of
> > antechamber.
> > antechamber -i cpc.pdb -fi pdb -o cpc.mol2 -fo mol2 -c bcc -s 2
> > Segmentation
>
> We need more information. First, what is in the cpc.pdb file? Second,
> was there any output? What happens if you remove the "-c bcc" flag?
> Third,
> what compiler and OS did you use?
>
> ...dac
>
>
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