AMBER Archive (2009)

Subject: Re: [AMBER] AmberTools 1.2 Installation on Ubuntu 9.10 Karmic Koala

From: case (case_at_biomaps.rutgers.edu)
Date: Wed Nov 11 2009 - 16:36:59 CST

On Wed, Nov 11, 2009, Wallace Kunin wrote:

> This is antechamber.out:
>
> Total number of electrons: 58; net charge: 0
> >
> > Running: /home/kunin/amber10/bin/mopac.sh
> > ln: creating hard link `FOR005': File exists
> > /home/kunin/amber10/bin/mopac.sh: 12: Syntax error: Bad fd number

You need to remove the FOR005 file. It must be left over from a previous,
failed run. (Note that mopac.sh should clean things up on its last line,
but that might not have been executed...)

...dac

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