AMBER Archive (2009)

Subject: RE: [AMBER] Segmentation Fault

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Thu Nov 05 2009 - 12:29:20 CST

Hi John,

Did you try running the test cases again? - in parallel?

If it is something which 'definitely' worked before but now doesn't it
likely means they have updated the software on the machine, and not told
you. If they changed the default mpi installation, the default compiler
versions etc it can cause weird behavior.

I would suggest doing a make clean and compiling it again which will then
pick up the new mpi and new compilers and associated libraries.

All the best
Ross

> -----Original Message-----
> From: amber-bounces_at_ambermd.org [mailto:amber-bounces_at_ambermd.org] On
> Behalf Of Beale, John
> Sent: Thursday, November 05, 2009 10:05 AM
> To: amber_at_ambermd.org
> Subject: [AMBER] Segmentation Fault
>
> I have been running sander.MPI on an SGI workstation (using mpirun) for
> quite some time. Now, for some reason, when I try to run sander.MPI on
> the same system I get a segmentation fault. Can someone help me track
> down this problem?
>
>
>
> John
>
>
>
>
>
>
>
>
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber

_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber