AMBER Archive (2009)

Subject: Re: [AMBER] AMBER: segmentation fault when running parmchk

• Previous message: Junmei Wang: "Re: [AMBER] Antechamber and Parmchk problems"
• In reply to: Alexander Boncheff: "[AMBER] AMBER: segmentation fault when running parmchk"
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parmchk cannot take a pdb file. The support file formats are mol2, prepi.
prepc and ac.

Best

Junmei

On Tue, Nov 3, 2009 at 1:41 PM, Alexander Boncheff <abonchef_at_uoguelph.ca>wrote:

> Dear AMBER users,
>
> Whenever I use parmchk, either for a lib or pdb or prep file I always get a
> Segmentation fault error. Below is what the command line tells me.
>
> ~amber10/exe$ ./parmchk -i file.pdb -f pdb -o file.frcmod
> Segmentation fault (core dumped)
>
> My system is running AMBER10 with AMBERTools 1.2 on Ubuntu 9.10. There is
> one instance in 2004 where another user had a similar error. They were told
> to upload the jmins0.prep file. When I use locate jmins0.prep, nothing is
> found.
>
> Best Regards,
>
> Alex Boncheff
>
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• Previous message: Junmei Wang: "Re: [AMBER] Antechamber and Parmchk problems"
• In reply to: Alexander Boncheff: "[AMBER] AMBER: segmentation fault when running parmchk"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]