AMBER Archive (2009)

Subject: [AMBER] Preparing distance restraints

From: Yunjie Zhao (yjzhao.wh_at_gmail.com)
Date: Mon Oct 26 2009 - 03:44:58 CDT

Hi,
  I want constrain a distance in my RNA system, but when I ran the input
file, there are some errors.

makeDIST_RST -ual 8col.wc -pdb rna.pdb -rst RST.wc

here is my 8col.wc file:
  1 GUA O6 12 URA H3 2.09 2.29
  * ***** ** ** ****** ** ***** *****
  * ***** ** ** ****** ** ***** *****
  * ***** ** ** ****** ** ***** *****
  * ***** ** ** ****** ** ***** *****

and here is errors in my out put file:
# makeDIST_RST
Currently configured for up to 5000 atoms
Using MAP file /export/home/zyj/amber9/dat/map.DG-AMBER
ERROR no map function for H3 URA :data= 1 GUA O6 12 URA H3
2.09 2.29

I hope that someone can help me to deal with this trouble, thank you!

Yunjie Zhao
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber