AMBER Archive (2009)

Subject: [AMBER] Salt bridge time scale

From: Mannan (malie_03_at_yahoo.co.in)
Date: Sun Oct 25 2009 - 20:57:20 CDT

Hi Amber Pals,
 
I would like to plot the time scale of the interaction between Thr Phos and Arg.
I could see visually in VMD, but when calculate the time scale by VMD, I could not get  the phospho related stuff, where as I could get Arg-Glu, Arg-Asp.  I could not get the % of Hbond analysis as well for the Phos.
 
I wanted to plot the various interaction like distance between Phos with Arg, Lys.
 
Thanks in Advance.
 
Thomas

      Keep up with people you care about with Yahoo! India Mail. Learn how. http://in.overview.mail.yahoo.com/connectmore
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber