AMBER Archive (2009)

Subject: Re: [AMBER] translate multiple residues

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Wed Oct 21 2009 - 15:53:20 CDT

> i would like to be able to move (translate) all the dna
>
> e.g. translate sys2.4:22 {x y z}
> or translate sys2.4-22 {x y z}
>
> is this possible? the above gave me syntax errors

I suspect the system is centered on the origin (vacuum) or in the
box with a corner on the origin (periodic boundary) when saving
parm files, so the only moves that matter would be one molecule
relative to another. You can select and drag/rotate in xleap, tho
other editors may be more intuitive.

Bill

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