AMBER Archive (2009)

Subject: Re: [AMBER] xleap-does not work

From: case (case_at_biomaps.rutgers.edu)
Date: Sat Oct 10 2009 - 07:27:01 CDT

On Sat, Oct 10, 2009, Rilei Yu wrote:
>
> After failing many times to install the amber10 in the ubuntu, I decided
> to install it again, this afternoon. Today, I installed it step by step
> based on the tutorial on our forum. After finished the whole process,
> I found the xleap still did not work. When I load the pdb (completely
> normal residues) from database, I found all the atom were not recognized
> by amber!

We need more information: you need to say exactly what commands you typed
to "load the pdb". Also, have you run the tutorials? My (wild?) guess is
that you did not properly load a force field, and the tutorials (esp. tutorial
B1) illustrate how to do that.

...dac

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