AMBER Archive (2009)

Subject: Re: [AMBER] solvent accessible surface area

From: Ganesh Kamath (gkamath9173_at_gmail.com)
Date: Wed Sep 23 2009 - 14:26:33 CDT

For a trajectory. The file is a mdcrd file format of AMBER. I could also
convert the mdcrd file
to a bunch of PDBs.

thanks,
ganesh

On Wed, Sep 23, 2009 at 3:20 PM, Carlos Simmerling <
carlos.simmerling_at_gmail.com> wrote:

> for a snapshot, or a full trajectory? what format are the coordinates?
>
> On Wed, Sep 23, 2009 at 3:07 PM, Ganesh Kamath <gkamath9173_at_gmail.com
> >wrote:
>
> > Hi Amber Users,
> >
> > Could anyone tell me how to calculate the solvent accessible surface
> areas
> > for a protein in explicit water.
> >
> > thanks,
> >
> > ganesh
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> >
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