AMBER Archive (2009)

Subject: Re: [AMBER] How to prepare the coordinate and toplogy files in leap ?

• Previous message: s. Bill: "[AMBER] Ki and G"
• In reply to: xuemeiwang1103: "[AMBER] How to prepare the coordinate and toplogy files in leap ?"
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On Mon, Sep 14, 2009, xuemeiwang1103 wrote:
>
> I have a protein that I have read into leap so that I can solvata ,prepare coordinata and toplogy files .But when I have done Save,I got this :
>
> ( residues lacking conect0 /connect1 -these don't have chain types marked -
> res total affected
> CPRO 1
> NASP 1
> WAT 570 ）
> Could anyone tell me the reason? Thank you !

This is just an informational message, nothing to worry about. It simply
states that waters are not covalently connected to other residues, and that
the N and C-terminii on only connected on one side.

...dac

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• Previous message: s. Bill: "[AMBER] Ki and G"
• In reply to: xuemeiwang1103: "[AMBER] How to prepare the coordinate and toplogy files in leap ?"
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