AMBER Archive (2009)

Subject: RE: [AMBER] How to denature DNA

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Tue Sep 08 2009 - 12:33:09 CDT

> Is it possible to do with amber

You can use restraints to force an increasing distance between pairs
of atoms. Measuring free energy of dissociation probably takes more
work to set up and calculate.

Bill

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