AMBER Archive (2009)

Subject: Re: [AMBER] Re: connect

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Mon Jun 15 2009 - 15:39:32 CDT

> I connected my residues in xleap and saved it as library file .When I save
> it as savepdb libraryfilename filename.pdb , and view the pdb file .This
> pdb file does not show any connectivity among the residues What can be the
> reason behind or I can proceed.

Leap doesn't put CONECT records in its output pdb files, so other
programs are left to either form bonds based on their own chemical
knowledge, or leave bonds out altogether. So there is nothing wrong
with your setup per se.

Bill

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