AMBER Archive (2009)

Subject: Re: ظ [AMBER] parallel error

From: Tom Joseph (ttjoseph_at_gmail.com)
Date: Mon Jun 15 2009 - 07:51:49 CDT

What does your output file (that you specified with -o) look like?
Often there will be an error message in that in addition to the MPI
abort message.

--Tom

On Mon, Jun 15, 2009 at 8:08 AM, ໪<fantastic_0919_at_yahoo.com.cn> wrote:
> Dear Tom Joseph,
> Thanks very much for your reply. I know what you mean. But problem is that after specify my input and output files correcly, I will still get the error.I am just confused. Could you help me figure it out? Thanks very much!
>
> Best wishes
>
> Qinghua Liao
>
> fantastic_0919_at_yahoo.com.cn or fantasticqhl_at_yahoo.com
>
>
>
>
> ________________________________
> ˣ Tom Joseph <ttjoseph_at_gmail.com>
> ռˣ AMBER Mailing List <amber_at_ambermd.org>
> ѷͣ 2009/6/15(һ), 7:54:19
> ⣺ Re: [AMBER] parallel error
>
> Did you run sander.MPI without any input files? If you don't specify
> any it will do an MPI abort.
>
> --Tom
>
> On Mon, Jun 15, 2009 at 3:31 AM, ໪<fantastic_0919_at_yahoo.com.cn> wrote:
>> Hi amber users,
>>
>> I encountered the error of parallel calculations. I use the ifort compiler to compile amber, and also using mpich2 as parallel software. After compiling parallel vertion of amber, I run sander.MPI, but I got the error like this:
>>
>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0[unset]: aborting job:
>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>>
>> I don't know what's the problem, can someone help me to figure it out? Any response will be appreciated.
>>
>> All the best,
>>
>> Qinghua Liao
>> fantastic_0919_at_yahoo.com.cn or fantasticqhl_at_yahoo.com
>>
>>
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