AMBER Archive (2009)

Subject: [AMBER] How to calculate the distance of CA of all residues in the trajectory

From: Thomas Leonard (thomasj_at_bii.a-star.edu.sg)
Date: Sun Jun 07 2009 - 20:45:54 CDT


Hi Amber peoples,
I am interested to check my system opens up or not, I have conformed
through PCA, still I would like to calculate the distance between CA
atoms for my entire system of 100 residues
How to calculate the distance of CA for all residues in the trajectory

Thanks in Advance,
Thomas

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