AMBER Archive (2009)

Subject: [AMBER] how to add water for membrane, in Z direction only or xyz

From: xueqin pang (pangxueqintea_at_yahoo.com.cn)
Date: Thu Jun 04 2009 - 03:13:07 CDT

Hello everyone,
 
I am doing computational stimulation of GPCR now. I want to know after inserting GPCR into lipid bilayers, how to add water molecular to the whole system, in Z direction only or all the three directions(X Y Z) while the lipid bilayer is in the xy plane?
 
Thanks very much
 
=================================================================
Pang Xueqin
State Key Laboratory of Molecular Reaction Dynamics
Dalian Institute of Chemical Physics
Chinese Academy of Sciences.
Tel: +86-411-84379352 Fax: +86-411-84675584
http://www.english.dicp.ac.cn/
=================================================================

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