AMBER Archive (2009)

Subject: [AMBER] RE: About Amber10 installation "Possible Failure"

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Tue May 26 2009 - 10:38:19 CDT

Hi Navanath,

 

I am copying this to the AMBER mailing list which is where such questions
should be posted. Please see http://ambermd.org/ for sign up details.

 

With regards to the possible failure messages these are exactly that,
possible failures. You should take a look at the file
$AMBERHOME/test/TEST_FAILURES.diff

 

Most of the differences should simply be roundoff in the last decimal place
or so, or things like 10E-13 rounded to zero. In this case you are fine. If
there are any larger diffs that you think are not due to roundoff then
please send details to the mailing list and we can comment.

 

With regards to the not found error. It is a little difficult to know where
this is coming from without more information about your system setup etc.
Note the bpti test case - in $AMBERHOME/test/mmtsb is not run by default in
AMBER 10. It is designed to be used with mmtsb installed. Did you install
this?

 

All the best

Ross

 

From: Navanath Kumbhar [mailto:nmk.biotechnology_at_gmail.com]
Sent: Monday, May 25, 2009 2:13 AM
To: ross_at_rosswalker.co.uk
Subject: Fwd: About Amber10 installation "Possible Failure"

 

 

Dear Sir,

 

I am try to intalling Amber10 on Red Hat Linux 5,after installaton for
testing of whether it is succesfully installled or not i used commands 'make
test', it gives some "Possible Failure" messages. I gone through the user
guide mannual but i unable to find out whre is the problem. I also try to
run some basic examles but, 'Running Minimization for BPTI'

errore is -bash:Running command not found.

Please give me any suggestion to solve this problem.

Thanking you

Navanath Kumbhar

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