AMBER Archive (2009)

Subject: [AMBER] Re: How to know that the md is stable in equilibration run

• Previous message: Rubben Torella: "[AMBER] Problem with MM-PBSA energy calculation"
• In reply to: nicholus bhattacharjee: "[AMBER] How to know that the md is stable in equilibration run"
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Another query is that is there a optimum rmsd value between my starting
structure and the final structure (the structure I got after md). Someone
said that the rmsd should not be more than 2 Armstrong. Is it so?
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• Previous message: Rubben Torella: "[AMBER] Problem with MM-PBSA energy calculation"
• In reply to: nicholus bhattacharjee: "[AMBER] How to know that the md is stable in equilibration run"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]