AMBER Archive (2009)

Subject: [AMBER] How to choose the counter ions for proteins?

From: Chih-Ying Lin (chihying_at_usc.edu)
Date: Sat May 23 2009 - 00:42:40 CDT


Hi
How to choose the counter ions for proteins?
Proteins are made of amino acids.
Does it mean the counter ions of protein H+ or OH-?
Does amber have the default ions of H+ and OH-?

Thank you
Lin

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