AMBER Archive (2009)

Subject: Re: [AMBER] ptraj questions

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Fri May 22 2009 - 08:57:08 CDT

Hi,

Read manual of 'ptraj' part.

When you read the trajectory, read only every 500 ps snapshots.

Another way is using VMD.

After reading if you don't get it, then post your problem again with detail.

Good luck.

On Wed, May 20, 2009 at 10:39 AM, Jia Xu <xujia.ruc_at_gmail.com> wrote:

> Dear Amber users,
>
> I have a 60 nanoseconds trajectory, and I want to generate 120
> PDB-format frames from the trajectory every 0.5 ns. However, I don’t know
> how to do that. Could anyone help me out?
>
> Thanks in advance!
>
>
>
>
>
> --
> Jia Xu
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
> 

-- 
Best wishes,

Myunggi Yi
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