AMBER Archive (2009)

Subject: Re: [AMBER] Problem with nonstandard residues

From: David A. Case (case_at_biomaps.rutgers.edu)
Date: Tue May 19 2009 - 07:54:14 CDT

On Tue, May 19, 2009, moitrayee_at_mbu.iisc.ernet.in wrote:

> Loading Prep file: ./TSB.in
> Loading PDB file: ./1QF6_TSB.pdb
> Added missing heavy atom: .R<TSB 644>.A<O3 16>
> Added missing heavy atom: .R<TSB 644>.A<P1 17>

It looks like the atom names in the TSB.in file do not match the atom names in
the PDB file for residue TSB. You will have to modify one or the other of
these files to make them consistent.

...dac

_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber