AMBER Archive (2009)

Subject: [AMBER] Protein Docking

From: Chih-Ying Lin (chihying_at_usc.edu)
Date: Mon May 11 2009 - 15:21:45 CDT


HI
When i visualize the MD trajectory, the protein and ligand are closed by.
But, I don't know if ligand really DOCK on the protein.

Please tell me how to define the successful docking.
Thank you
Lin

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