AMBER Archive (2009)

Subject: [AMBER] Why the job idle before the sentence "| Running AMBER/MPI version on 2 nodes"?

From: Catein Catherine (askamber23_at_hotmail.com)
Date: Mon May 04 2009 - 10:16:08 CDT

Dear All,

 

Why the job idle before the sentence "| Running AMBER/MPI version on 2 nodes"?

 

I found a parallel job idle after the following step

--------------------------------------------------------------------------------
   3. ATOMIC COORDINATES AND VELOCITIES
--------------------------------------------------------------------------------

 begin time read from input coords = 0.000 ps

 Number of triangulated 3-point waters found: 2968

--------------------------------------------------------------------------------

 

If the jobs finish normally with single node, the next sentence should be as follows

==============================================================

| Running AMBER/MPI version on 1 nodes

==============================================================

It seems to me that the jobs was idle because AMBER/MPI cannot assign to parallel runs.

 

Any hints how to solve this problem?

 

Best regards,

 

cat

_________________________________________________________________
Invite your mail contacts to join your friends list with Windows Live Spaces. It's easy!
http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber