AMBER Archive (2009)

Subject: [AMBER] ambertools failed - SMP IA64

From: Vijay Manickam Achari (vjrajamany_at_yahoo.com)
Date: Thu Apr 16 2009 - 08:17:34 CDT

Hi,

I am installing ambertools and it's failing in the compilation with erros below. Please advise. Thanks.

p/s: Attached is the config.h file.

make[1]: Entering directory `/usr/local/amber10/src/nss'
Makefile:17: warning: overriding commands for target `.c.o'
.../config.h:99: warning: ignoring old commands for target `.c.o'
/usr/local/amber10/bin/nab -o matgen matgen.o libsym.a
/opt/intel/mkl/10.0.010/lib/64/libmkl_intel_thread.a(dgemm_omp.o): In function `mkl_blas_dgemm':
__tmp_dgemm_omp.c:(.text+0xe2): undefined reference to `__kmpc_global_thread_num'
__tmp_dgemm_omp.c:(.text+0x4a2): undefined reference to `__kmpc_ok_to_fork'
__tmp_dgemm_omp.c:(.text+0x4f2): undefined reference to `__kmpc_push_num_threads'
__tmp_dgemm_omp.c:(.text+0x5a2): undefined reference to `__kmpc_fork_call'
__tmp_dgemm_omp.c:(.text+0x5d2): undefined reference to `__kmpc_serialized_parallel'
__tmp_dgemm_omp.c:(.text+0x692): undefined reference to `__kmpc_end_serialized_parallel'
__tmp_dgemm_omp.c:(.text+0x812): undefined reference to `__kmpc_ok_to_fork'
__tmp_dgemm_omp.c:(.text+0x862): undefined reference to `__kmpc_push_num_threads'
__tmp_dgemm_omp.c:(.text+0x922): undefined reference to `__kmpc_fork_call'
__tmp_dgemm_omp.c:(.text+0x952): undefined reference to `__kmpc_serialized_parallel'
__tmp_dgemm_omp.c:(.text+0xa12): undefined reference to `__kmpc_end_serialized_parallel'
/opt/intel/mkl/10.0.010/lib/64/libmkl_intel_thread.a(dgemm_omp.o): In function `L_mkl_blas_dgemm_235__par_loop0':
__tmp_dgemm_omp.c:(.text+0xcc2): undefined reference to `__kmpc_for_static_init_8'
__tmp_dgemm_omp.c:(.text+0x13f2): undefined reference to `__kmpc_for_static_fini'
/opt/intel/mkl/10.0.010/lib/64/libmkl_intel_thread.a(dgemm_omp.o): In function `L_mkl_blas_dgemm_255__par_loop1':
__tmp_dgemm_omp.c:(.text+0x16a2): undefined reference to `__kmpc_for_static_init_8'
__tmp_dgemm_omp.c:(.text+0x18a2): undefined reference to `__kmpc_for_static_fini'
/opt/intel/mkl/10.0.010/lib/64/libmkl_intel_thread.a(mkl_threading.o): In function `MKL_Get_Max_Threads':
__tmp_mkl_threading.c:(.text+0x1a2): undefined reference to `omp_get_max_threads_'
__tmp_mkl_threading.c:(.text+0x1d2): undefined reference to `omp_in_parallel_'
cc failed!
make[1]: *** [matgen] Error 1
make[1]: Leaving directory `/usr/local/amber10/src/nss'
make: *** [install] Error 2
ptmlxsmp:/usr/local/amber10/src #

Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
 vjramana_at_gmail.com


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