AMBER Archive (2009)

Subject: Re: [AMBER] hpux sander.serial failure info

From: David A. Case (case_at_biomaps.rutgers.edu)
Date: Wed Apr 15 2009 - 07:07:45 CDT

On Thu, Apr 16, 2009, Yiannis Georgiadis wrote:

> Well, I send you the cytosine output test to close this thread
> A simple debugging with gdb is not informative,
> an indication on $$move_byte+0x40 call is referred at time of BUS error

Did you ask for a traceback? That should usually tell you exactly where
the code was when the bus error occurred.
>
> I am getting the prize... but as your configure_amber script has a
> hpf90 option .. it is not entirely mine ... :-)

Well, that option is just left over from earlier days when we had HP
compilers to test. Unfortunately, I don't think any Amber developers
still have access to such an environment. Since you have gdb, do you
also have gcc/gfortran? That (or some other compiler) might be a useful
alternative.

...dac

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