AMBER Archive (2009)

Subject: Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so

From: Francesco Pietra (chiendarret_at_gmail.com)
Date: Wed Apr 08 2009 - 18:17:38 CDT

On Thu, Apr 9, 2009 at 12:24 AM, Atro Tossavainen
<atro.tossavainen+amber_at_helsinki.fi> wrote:
>> > echo $LD_LIBRARY_PATH
>>
>> /opt/intel/mkl/10.0.1.014/lib/em64t/:/opt/intel/cce/10.1.015/lib:/opt/intel/fce/10..1.015/lib:usr/local/lib
>
> I see at least two obvious typos and one small detail that is wrong
> but might not have an effect at all.  I hope you see them too.
>
> I assume one of the directories above is where you would have the
> library involved.  Maybe you will double check anyway.
>
>> icc -c -wd117,177,266,880,1011 -DBINTRAJ   -DSTAND_ALONE nhash.c
>> /usr/include/limits.h(125): catastrophic error: could not open source
>> file "limits.h"
>>   # include_next <limits.h>                           ^
>
> Googling for
>
> icc catastrophic limits.h
>
> takes me to
>
> http://software.intel.com/en-us/forums/intel-c-compiler/topic/59886/
>
> which has a solution at the end.

Yes, I had also seen that and have made deb packages of the 10.1.022
version (i tried with version 11 but my fixing script did not work:
alien alone is unable with both 10 and 11. we will see if this story
has an emd.
f.
>
> --
> Atro Tossavainen (Mr.)               / The Institute of Biotechnology at
> Systems Analyst, Techno-Amish &     / the University of Helsinki, Finland,
> +358-9-19158939  UNIX Dinosaur     / employs me, but my opinions are my own.
> < URL : http : / / www . helsinki . fi / %7E atossava / > NO FILE ATTACHMENTS
>
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