AMBER Archive (2009)

Subject: Re: [AMBER] errors while testing

From: Per Jr. Greisen (pgreisen_at_gmail.com)
Date: Wed Apr 08 2009 - 06:06:40 CDT

Hi,

When I run the serial test I get the same errors

make test.serial

cd plane_plane_restraint && ./Run.dinuc_plpt
SANDER: Dinucleoside restrained with new plane-point angle
        restraint that was defined with new natural
        language restraint input.
Arithmetic Exception
  ./Run.dinuc_plpt: Program error
*** Error code 1
make: Fatal error: Command failed for target `test.sander.BASIC'

and I try to run the LES_GB example

SANDER: LES+GB
1: GB/LES GB1 diffcoords
Arithmetic Exception
  ./Run.LES: Program error

have you been able to run these examples on your SunOS?

With kind regards

Per

On Tue, Apr 7, 2009 at 12:18 PM, Atro Tossavainen
<atro.tossavainen+amber_at_helsinki.fi> wrote:
>> Job cre.764 on bohr: received signal FPE.
>
> FPE is a floating point exception.
>
> Are you able to run the same test with the serial version?  (Is the
> question even applicable...?)
>
>> it returns the following error
>> export TESTsander=/appl/ggamess/amber10/amber10/exe/sander.MPI; make
>> test.sander.BASIC
>> sh: TESTsander=/appl/ggamess/amber10/amber10/exe/sander.MPI: is not an
>> identifier
>
> You're speaking bash, and on Solaris, sh is the real deal unlike on Linux...
>
> In sh, the correct syntax is:
>
> IDENTIFIER=value
> export IDENTIFIER
>
> In bash, you can shortcut this to:
> export IDENTIFIER=value
>
> but doing so in a script that will be run by "/bin/sh" results in the
> problem you have described.
>
> --
> Atro Tossavainen (Mr.)               / The Institute of Biotechnology at
> Systems Analyst, Techno-Amish &     / the University of Helsinki, Finland,
> +358-9-19158939  UNIX Dinosaur     / employs me, but my opinions are my own.
> < URL : http : / / www . helsinki . fi / %7E atossava / > NO FILE ATTACHMENTS
>
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