AMBER Archive (2009)

Subject: [AMBER] MMPB(GB)SA on trimer

From: quantum_mania_at_yahoo.com
Date: Tue Apr 07 2009 - 20:01:39 CDT

Hi,

I have a trimeric system with one ligand bound to each monomer. I know the common approach is to run MMPB(GB)SA on each individual monomer, but am curious if it's ok to treat the trimer as the receptor and 3 ligands as the ligand?

Thanks,

DX
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