AMBER Archive (2009)

Subject: Re: [AMBER] Amber with AMOEBA force-field

From: David A. Case (case_at_biomaps.rutgers.edu)
Date: Mon Apr 06 2009 - 08:00:47 CDT

On Mon, Apr 06, 2009, Tomasio, Susana wrote:
>
> I am trying to run the example in amber10/test/sleap/amoeba, but I don't
> know how to create and solvate the box in sleap.
> (I mean the commands.. can't find it in the manual!)

The file Run.amoeba_sol shows how to solvate a protein using amoeba. If
that isn't helping, you need to give more detailed information about
exactly what you tried, and what happened.

....dac

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