AMBER Archive (2009)

Subject: [AMBER] ambmol2?

From: Taufik Al-Sarraj (taufik.alsarraj_at_utoronto.ca)
Date: Tue Mar 31 2009 - 17:28:51 CDT

Hi,

Is the an ambmol2 function in amber? i would like to use
ambpdb -p *.prmtop < *.rst> *.pdb

but to create a mol2, unfortunately i cannot create a pdb file because i
have some atoms named Si400 or H1400 which exceeds the number of digits
allowed in pdb.

alternatively, is there a way to load *.prmtop and *.rst files in
x/t/sleap and use the savemol2 function?

Best,
Taufik

_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber