AMBER Archive (2009)

Subject: [AMBER] modifying LYN

From: Marius Retegan (marius.s.retegan_at_gmail.com)
Date: Tue Mar 31 2009 - 08:36:21 CDT

Hello,

I have a cyclic peptide comprising of 10 amino acids, four of them being
lysine residues. On the neutral lysine residues, I want remove one of the
hydrogen atoms from the NZ atom in order to be able to connect the LYN
residue with another amino acid. My question is how can I modify the LYN
residue in order to make it accept 3 connections.
Any help would be appreciated.

Thank you
Marius
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