AMBER Archive (2009)

Subject: Re: [AMBER] Question

From: Kshatresh Dutta Dubey (kshatresh_at_gmail.com)
Date: Sat Mar 28 2009 - 04:16:03 CDT

Hello..
Firstly thanks to taking attention for my question. My detailed
problem is that, when i am running antechamber for preparation of
prepin files of some pdb files directly downloaded by web, then as
soon as i am running antechamber it is being exited and giving an
error like 'Segmentation error'.But when i am running antechamber for
mol2 file already minimized by gaussian, it is running. I am running
the command --
antechamber -i 2HYY.pdb -fi pdb -o 2HYY.prepin -fo prepi -c bcc -s 2

Thanks in advance

Regards
Kshatresh

On 3/27/09, Rausch, Felix <frausch_at_ipb-halle.de> wrote:
> Hello.
>
> To give other people the chance to help you effectively it would be very
> great if you could give more detailled information about your problem.
>
> What are you trying to do? What is the exact call of antechamber? How does
> the "segmentation fault" exactly looks like (there are just too many things
> which can cause such a common fault)? Maybe attach a file that gives this
> error and so on...
>
> Sincerely,
> Felix Rausch
>
>
> -----Original Message-----
> From: amber-bounces_at_ambermd.org on behalf of Kshatresh Dutta Dubey
> Sent: Fri 3/27/2009 2:06 PM
> To: AMBER Mailing List
> Cc:
> Subject: [AMBER] Question
> Dear amber Users,
>
> Can anyone tell me that what is the segmentation fault and why does it
> occure??? When I am running antechamber for some pdb or other input (not in
> my all inputs) then it is giving segmentation fault. What should i do in
> such condition???
>
> Thanks in advance..
>
> Kshatresh Dutta Dubey
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