AMBER Archive (2009)

Subject: Re: [AMBER] Problem with "Atom does not have a type"

From: David A. Case (case_at_biomaps.rutgers.edu)
Date: Fri Mar 27 2009 - 06:44:22 CDT

On Thu, Mar 26, 2009, Richard Tseng wrote:
>
> I first tried to generate topology and coordinate files for the RNA
> sequence. After loading the corresponding pdb file into leap, there are
> message indicates a fatal error, atom does not have a type.

Are you sure there is not some message of the sort "creating atom...".
Be sure that the atom names in the PDB file exactly match the atom names
in the RNA library. Mismatches are usually the cause of the error
message you cite.

....dac

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