AMBER Archive (2009)

Subject: [AMBER] continuam water

From: Mannan (malie_03_at_yahoo.co.in)
Date: Mon Mar 23 2009 - 23:11:50 CDT

Hi Amber users,
I would like to check the continuam water or residence time of water in simulation of protein with ligand in explicit water TIP3P.
If I keep all the water moelcules, then the trajectory becomes much larger for the VMD to visualise. If I remove some water moelcules, the top and crd files not matching.
 
Any help is much appreciated
 
Mannan

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