AMBER Archive (2009)

Subject: [AMBER] problem in installing AMBER10

From: Dr. Debaprasad Giri (dgiri.app_at_itbhu.ac.in)
Date: Mon Mar 23 2009 - 05:31:26 CDT

Dear sir:
    I have downloaded all the necessary files (Amber10, ambertools,
bugfix.all) to install
AMBER10. There is no problem in installing Ambertools-1.2. But I am facing
problem
while installing Amber.

1) patch -p0 -N -r patch-rejects < bugfix.all
2) ./configure_amber f95
3) make serial

While doing "make serial" I get the error. I have mentioned below the last
part of the error message:

---------------------------------------------------------------------
/usr/local/amber10/src/netcdf/src/f90/netcdf_dims.f90:12: undefined
reference to `nf_def_dim_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_inq_dimid':
/usr/local/amber10/src/netcdf/src/f90/netcdf_dims.f90:21: undefined
reference to `nf_inq_dimid_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function
`__netcdf__nf90_rename_dim':
/usr/local/amber10/src/netcdf/src/f90/netcdf_dims.f90:30: undefined
reference to `nf_rename_dim_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_copy_att':
/usr/local/amber10/src/netcdf/src/f90/netcdf_attributes.f90:11: undefined
reference to `nf_copy_att_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function
`__netcdf__nf90_rename_att':
/usr/local/amber10/src/netcdf/src/f90/netcdf_attributes.f90:19: undefined
reference to `nf_rename_att_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_del_att':
/usr/local/amber10/src/netcdf/src/f90/netcdf_attributes.f90:27: undefined
reference to `nf_del_att_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function
`__netcdf__nf90_inq_attname':
/usr/local/amber10/src/netcdf/src/f90/netcdf_attributes.f90:37: undefined
reference to `nf_inq_attname_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function
`__netcdf__nf90_get_att_text':
/usr/local/amber10/src/netcdf/src/f90/netcdf_attributes.f90:76: undefined
reference to `nf_get_att_text_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_inq_varid':
/usr/local/amber10/src/netcdf/src/f90/netcdf_variables.f90:47: undefined
reference to `nf_inq_varid_'
../netcdf/lib/libnetcdf.a(netcdf.o): In function
`__netcdf__nf90_rename_var':
/usr/local/amber10/src/netcdf/src/f90/netcdf_variables.f90:86: undefined
reference to `nf_rename_var_'
collect2: ld returned 1 exit status
make[1]: *** [sander] Error 1
make: *** [serial] Error 2
------------------------------------------------------------------------------------------------

I would appreciate it very much if you kindly help me in this regard.

Thanking you in anticipation,

with best regards

Debaprasad Giri 

-- 
Dr. Debaprasad Giri
Reader
Department of Applied Physics
IT, BHU, Varanasi 221 005
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