AMBER Archive (2009)

Subject: RE: [AMBER] Metal in MD simulation

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Thu Mar 19 2009 - 10:12:24 CDT

Hi Priya

The following should be helpful. I assume you have all the parameters etc that you need. Do not use the ones provided in the tutorial they are just made up for the purposes of showing how to build the system.

http://ambermd.org/tutorials/advanced/tutorial1_adv/

All the best
Ross

> -----Original Message-----
> From: amber-bounces_at_ambermd.org [mailto:amber-bounces_at_ambermd.org] On
> Behalf Of priya priya
> Sent: Wednesday, March 18, 2009 11:25 PM
> To: AMBER_at_ambermd.org
> Subject: [AMBER] Metal in MD simulation
>
> Dear Amber Users,
>
> I am interested in including Cu+ or Zn metal in the peptide simulation.
>
> Is there any basic tutorial to start with that.
>
> Regards
> Priya
>
>
>
>
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