AMBER Archive (2009)

Subject: Re: [AMBER] error in constructing DNA from nucgen

From: Pansy Patel (pdpatel_at_mail.ucf.edu)
Date: Tue Mar 17 2009 - 14:24:58 CDT

Ye s I do have write permissions
ans I tested it on the example file from the tutorials also
which worked without errors

Pansy

>>> Carlos Simmerling <carlos.simmerling_at_gmail.com> 3/17/2009 2:53 PM >>>
are you in a directory where you have write permissions?
try to create a test file and see if you can. do ls -la and make sure
things are writable and owned by you.
if you're not sure how to interpret unix permissions, there is a nice
unix tutorial at
http://www.ee.surrey.ac.uk/Teaching/Unix/

On Tue, Mar 17, 2009 at 2:43 PM, Pansy Patel <pdpatel_at_mail.ucf.edu> wrote:
> Hello
>
> I am trying to construct an AB DNA hexamer using nucgen:
>
> nucgen -i nuc.in -o nuc.out -d $AMBERHOME/dat/leap/parm/nucgen.dat -p nuc.pdb
> but I get the following error:
> Unit 6 Error on OPEN: nuc.out
> Can somebody please tell me what it means and how I can get it to work ?
>
> Pansy
>
>
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