AMBER Archive (2009)

Subject: Re: [AMBER] problems compiling ambertool

From: Per Jr. Greisen (pgreisen_at_gmail.com)
Date: Tue Mar 17 2009 - 11:06:00 CDT

Hi,

And thanks everybody for the help with ambertools it is now compiled. Next,
I compile the amber using the sparc option

./configure_amber sparc
make -f Makefile

which gives the following error
gmake[2]: Leaving directory
`/xbar/nas1/gappl/gappl/ggamess/amber10/amber10/src/lmod'
cd ../lmod; cp lmodprmtop ../../exe; chmod 0755 ../../exe/lmodprmtop
cd ../dcqtp; make libdivcon.a
gmake[2]: Entering directory
`/xbar/nas1/gappl/gappl/ggamess/amber10/amber10/src/dcqtp'
cd mod; make QMMM=-DQMMM -f Makefile.dcsander libdivcon.a
gmake[3]: Entering directory
`/xbar/nas1/gappl/gappl/ggamess/amber10/amber10/src/dcqtp/mod'
f90 -c -O1 -free -M../../sander -I../src/include -DHAS_LAPACK -DQMMM -o
../obj/dpinit.o ../src/pb/dpinit.F90
"dpinit.F90", line 240: error: missing '.
gmake[3]: *** [../obj/dpinit.o] Error 1
gmake[3]: Leaving directory
`/xbar/nas1/gappl/gappl/ggamess/amber10/amber10/src/dcqtp/mod'
gmake[2]: *** [libdivcon.a] Error 2
gmake[2]: Leaving directory
`/xbar/nas1/gappl/gappl/ggamess/amber10/amber10/src/dcqtp'
gmake[1]: *** [divcon] Error 2
gmake[1]: Leaving directory
`/xbar/nas1/gappl/gappl/ggamess/amber10/amber10/src/sander'
gmake: *** [serial] Error 2

if I then look into the file I cannot see that there should be a syntax
error

  write(gnIout,*) 'External radii file found& !!', &
    & ' Will not use the radii specified in block.F'

On Tue, Mar 17, 2009 at 1:49 PM, David A. Case <case_at_biomaps.rutgers.edu>wrote:

> On Tue, Mar 17, 2009, Per Jr. Greisen wrote:
> > make: Fatal error: Command failed for target `GraphToHoldScores.o'
> > Current working directory
> > /xbar/nas1/gappl/gappl/ggamess/amber10/amber10/src/reduce/reduce_src
>
> You can probably just skip compiling reduce...it seems to require GNU
> tools, and is not very often used in AmberTools.
>
> ...dac
>
>
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