AMBER Archive (2009)

Subject: Re:Re: [AMBER] Unit 5 Error on OPEN: nan.in

From: Nancy (nancy4619_at_163.com)
Date: Tue Mar 17 2009 - 08:37:44 CDT

Thanks mathew K varghese and Jenny Iskrenova very much .I have solved my problem.

All the best!
Nancy

在2009-03-17，"mathew k varghese" <mathew_kvarghese_at_yahoo.co.in> 写道：
>Hello,
>
>Do you have all the input files(nan.in, .prmtop, .inpcrd or .rst)? in the same directory where you are running the program? Try making a new directory, copy all the iput files to that directory and check the permissions of all the files. (use ls -l command).Which is your machine type, os, your status? do you have root permissions? If so try run the program as root to check it is due to permission problems.
>
>
>
>
>?
>
>/\/\athew
>
>Mathew K Varghese
>Research Scholar
>School of Pure and Applied Physics
>M.G.University
>Kottayam, Kerala
>India
>
>email mathew_kvarghese_at_yahoo.co.in
>
>===========================================================================
>
>--- On Tue, 17/3/09, Nancy <nancy4619_at_163.com> wrote:
>
>From: Nancy <nancy4619_at_163.com>
>Subject: [AMBER] Unit 5 Error on OPEN: nan.in
>To: amber_at_ambermd.org
>Date: Tuesday, 17 March, 2009, 2:41 PM
>
>Dear all,
>
>? ? I am sorry to send this letter again , i am using amber10 in linux .When? i use Sander to make minimization of solvent(explicit solvent),
>
> $AMBERHOME/exe/sander -O -i nan.in -o nan.out -p nan.prmtop -c nan.inpcrd -r nan.rst -ref nan.inpcrd
>The input and output files are in the attachment .
>It showed that Unit 5 Error on OPEN :nan.in. I have tried many times and i am sure the directory is right, then i tried example B1 of amber tutorials about DNA ,just? made the same mistake ,i do not konw where is wrong, can any body? help me ?
>Thanks in advance!
>Nancy
>
>
>
>
>
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