AMBER Archive (2009)

Subject: Re: Re: [AMBER] Unit 5 Error on OPEN: nan.in

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Mon Mar 16 2009 - 09:32:02 CDT

before you said the error was for nan.in, now your email says nan.lib.
it helps a lot if you copy and paste exactly the error rather than trying to
type it.
can you paste the error, and also tell us if you get sander output, and what
it says?
also it might help to see your sander script, and to know if you are running
this on PBS or some other queue software, and any other details about your
procedures.

also let us know if all of the test cases passed correctly.

On Mon, Mar 16, 2009 at 10:01 AM, Nancy <nancy4619_at_163.com> wrote:

> Thank you Mathew K Varghese. I have checked the permissions of nan.infile,it is ok. But i still have the same mistake information :unit 5 error
> on open : nan.lib. What is wrong ?Can any one tell me? Thank you in advance!
> Nancy
>
>
> $B:_(B2009-03-16$B!$(B"mathew k varghese" <mathew_kvarghese_at_yahoo.co.in> $B<LF;!'(B
>
> Hello,
>
>
> Check the permissions of nan.in file.
>
>
>
> /\/\athew
>
> Mathew K Varghese
> Research Scholar
> School of Pure and Applied Physics
> M.G.University
> Kottayam, Kerala
> India
>
> email mathew_kvarghese_at_yahoo.co.in
>
> ===========================================================================
>
> --- On Mon, 16/3/09, Nancy <nancy4619_at_163.com> wrote:
>
> From: Nancy <nancy4619_at_163.com>
> Subject: [AMBER] Unit 5 Error on OPEN: nan.in
> To: amber_at_ambermd.org
> Date: Monday, 16 March, 2009, 6:19 PM
>
> Dear all
> when i use sander to make minimization of solvent,
> $AMBERHOME/exe/sander -O -i nan.in -o nan.out -p nan.prmtop -c nan.inpcrd
> -r nan.rst -ref nan.inpcrd
> It makes mistakes :unit 5 error on open:nan.in
> I am sure the directory is right,can any body tell me what is wrong?
>
> -----Inline Attachment Follows-----
>
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