AMBER Archive (2009)

Subject: Re: [AMBER] Regarding leap

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Wed Mar 04 2009 - 05:48:30 CST

I found what seems like helpful information on this by searching the amber
archives for
amber new solvent

On Wed, Mar 4, 2009 at 6:43 AM, aneesh cna <aneeshcna_at_gmail.com> wrote:

> Dear amber users,
> I am using amber 9.0 for simulation. I would like to add
> some organic molecules in a cubic box by keeping my protein of interest at
> the center of box, just like what 'solvetbox' command doing in leap with
> water molecules.But instead of water I would like to add organic molecules.
> Can anyone suggest me how to do this in amber?
>
> Thanks in advance
> Aneesh
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