AMBER Archive (2009)

Subject: Re: [AMBER] Error installing Amber

From: David Patiņo (dpatino_at_uvigo.es)
Date: Tue Feb 17 2009 - 08:58:05 CST

Ok thanks now is working properly

2009/2/16 David A. Case <case_at_biomaps.rutgers.edu>

> On Mon, Feb 16, 2009, David Pati?o wrote:
>
> > We're trying to install Amber 10 and AmberTools in an SGI Altix450
> machine.
> > In a SUSE Enterprise Server 10.
> > Everything was OK before the "make serial" command so we've just done:
> > AMBERHOME=/opt/amber10
> > export AMBERHOME
> > cd $AMBERHOME/src
> > ./configure_at -mpi -altix icc
> > make -f Makefile_at
> > cd /opt/amber10/test/
> > make -f Makefile_at
> > cd $AMBERHOME
> > patch -p0 -N -r patch-rejects < bugfix.all
> > cd $AMBERHOME/src
> > ./configure_amber ifort
> > make serial
> >
> > And now a lot of time before comes an error telling that everything is
> not
> > referenced
> > .
> > .
> > .
> > .
> > .
> > _ncsu-pmd-hooks.f:(.text+0xb12): referencia a `mpi_bcast_' sin definir
>
> This is quite odd: when you configured amber you did not specify a
> parallel option, and your command (apparently) was "make serial". So it
> is hard to see why the code would be looking for mpi commands.
>
> You can also look at the commands that are being executed and see if
> there are any "-DMPI" flags.
>
> Try this: cd to $AMBERHOME/src and execute "make clean" before typing
> "make serial". Also, examine your config_amber.h file to see if there
> is any reference to MPI. If there is, remove the config_amber.h file
> and re-run configure.
>
> ...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
> 

-- 

         --DAVID--
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber