AMBER Archive (2009)

Subject: RE: [AMBER] Compiling Carnal Amber7 in Amber9

From: Vijay Manickam Achari (vjrajamany_at_yahoo.com)
Date: Thu Feb 12 2009 - 03:12:29 CST

WHEN i COMPILE AS PER YOUR ADVICE, i GET ERROR AS BELLOW:

ptmlxclus:/usr/local/amber9/src/carnal # cc -o carnal *.c -lm
coord.c: In function 'initcoord':
coord.c:129: warning: incompatible implicit declaration of built-in function 'exit'
coord.c: In function 'writecrd':
coord.c:1022: warning: incompatible implicit declaration of built-in function 'exit'
coord.c: In function 'newpath':
coord.c:1150: warning: incompatible implicit declaration of built-in function 'exit'
distrib.c: In function 'initdistrib':
distrib.c:111: warning: incompatible implicit declaration of built-in function 'exit'
doit.c: In function 'procq':
doit.c:185: warning: incompatible implicit declaration of built-in function 'exit'
doit.c: In function 'printsumm':
doit.c:261: warning: incompatible implicit declaration of built-in function 'exit'
energy.c: In function 'initpairtypes':
energy.c:499: warning: incompatible implicit declaration of built-in function 'exit'
energy.c:541: warning: incompatible implicit declaration of built-in function 'exit'
energy.c:582: warning: incompatible implicit declaration of built-in function 'exit'
energy.c:608: warning: incompatible implicit declaration of built-in function 'exit'
energy.c: In function 'exclud':
energy.c:859: warning: incompatible implicit declaration of built-in function 'exit'
energy.c: In function 'nonbenergies':
energy.c:1308: warning: incompatible implicit declaration of built-in function 'exit'
energy.c:1355: warning: incompatible implicit declaration of built-in function 'exit'
energy.c:1447: warning: incompatible implicit declaration of built-in function 'exit'
group.c: In function 'binop':
group.c:339: warning: incompatible implicit declaration of built-in function 'exit'
group.c: In function 'getresinfo':
group.c:924: warning: incompatible implicit declaration of built-in function 'exit'
group.c:951: warning: incompatible implicit declaration of built-in function 'exit'
hbond.c: In function 'inithbond':
hbond.c:99: warning: incompatible implicit declaration of built-in function 'exit'
hbond.c:116: warning: incompatible implicit declaration of built-in function 'exit'
main.c: In function 'usage':
main.c:43: warning: incompatible implicit declaration of built-in function 'exit'
main.c: In function 'readin':
main.c:132: warning: incompatible implicit declaration of built-in function 'exit'
meas.c: In function 'calcangle':
meas.c:77: warning: incompatible implicit declaration of built-in function 'exit'
meas.c: In function 'calcplane':
meas.c:167: warning: incompatible implicit declaration of built-in function 'exit'
meas.c: In function 'calcbackbone':
meas.c:241: warning: incompatible implicit declaration of built-in function 'exit'
meas.c:247: warning: incompatible implicit declaration of built-in function 'exit'
pdbgen.c: In function 'pdbWAT':
pdbgen.c:44: warning: incompatible implicit declaration of built-in function 'exit'
pdbgen.c: In function 'pdbATOM':
pdbgen.c:96: warning: incompatible implicit declaration of built-in function 'exit'
pdbgen.c: In function 'pdbgen':
pdbgen.c:127: warning: incompatible implicit declaration of built-in function 'exit'
pdbgen.c:144: warning: incompatible implicit declaration of built-in function 'exit'
pointax.c: In function 'Backbone':
pointax.c:417: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c: In function 'scanI6':
rdprm.c:49: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:54: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:64: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:72: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:76: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:86: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c: In function 'scanI':
rdprm.c:109: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c: In function 'skipeoln':
rdprm.c:129: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c: In function 'preadln':
rdprm.c:151: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:160: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c: In function 'seek_section':
rdprm.c:180: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c: In function 'readparm':
rdprm.c:213: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c: In function 'NewMol':
rdprm.c:1029: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c: In function 'newparm':
rdprm.c:1123: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:1142: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:1158: warning: incompatible implicit declaration of built-in function 'exit'
rdprm.c:1169: warning: incompatible implicit declaration of built-in function 'exit'
rms.c: In function 'dorms':
rms.c:581: warning: incompatible implicit declaration of built-in function 'exit'
rms.c:592: warning: incompatible implicit declaration of built-in function 'exit'
static.c: In function 'setupstat':
static.c:125: warning: incompatible implicit declaration of built-in function 'exit'
stream.c: In function 'startser':
stream.c:290: warning: incompatible implicit declaration of built-in function 'exit'
stream.c:309: warning: incompatible implicit declaration of built-in function 'exit'
table.c: In function 'inittable':
table.c:86: warning: incompatible implicit declaration of built-in function 'exit'
table.c: In function 'setuptab':
table.c:145: warning: incompatible implicit declaration of built-in function 'exit'
table.c: In function 'writetab':
table.c:414: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'fileargs':
util.c:116: warning: incompatible implicit declaration of built-in function 'exit'
util.c:123: warning: incompatible implicit declaration of built-in function 'exit'
util.c:152: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'genopen':
util.c:253: warning: incompatible implicit declaration of built-in function 'exit'
util.c:262: warning: incompatible implicit declaration of built-in function 'exit'
util.c:272: warning: incompatible implicit declaration of built-in function 'exit'
util.c:278: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'fmtnstart':
util.c:372: warning: incompatible implicit declaration of built-in function 'exit'
util.c:383: warning: incompatible implicit declaration of built-in function 'exit'
util.c:389: warning: incompatible implicit declaration of built-in function 'exit'
util.c:407: warning: incompatible implicit declaration of built-in function 'exit'
util.c:419: warning: incompatible implicit declaration of built-in function 'exit'
util.c:425: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'scanfmt':
util.c:611: warning: incompatible implicit declaration of built-in function 'exit'
util.c:625: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'getsetaddr':
util.c:880: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'readln':
util.c:934: warning: incompatible implicit declaration of built-in function 'exit'
util.c:945: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'get':
util.c:1088: warning: incompatible implicit declaration of built-in function 'malloc'
util.c:1094: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'reget':
util.c:1116: warning: cast to pointer from integer of different size
util.c:1120: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'inerr':
util.c:1158: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'savederr':
util.c:1191: warning: incompatible implicit declaration of built-in function 'exit'
util.c: In function 'getbox':
util.c:1471: warning: incompatible implicit declaration of built-in function 'exit'
util.c:1479: warning: incompatible implicit declaration of built-in function 'exit'
util.c:1496: warning: incompatible implicit declaration of built-in function 'exit'
util.c:1510: warning: incompatible implicit declaration of built-in function 'exit'
util.c:1516: warning: incompatible implicit declaration of built-in function 'exit'
ptmlxclus:/usr/local/amber9/src/carnal #

Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
 vjramana_at_gmail.com

--- On Thu, 12/2/09, Bill Ross <ross_at_cgl.ucsf.edu> wrote:

> From: Bill Ross <ross_at_cgl.ucsf.edu>
> Subject: RE: [AMBER] Compiling Carnal Amber7 in Amber9
> To: amber_at_ambermd.org
> Date: Thursday, 12 February, 2009, 3:04 AM
> I just did this on a HP AlphaServer:
>
> % cd carnal
> % cc -o carnal *.c -lm
>
> Bill
>
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber

      

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