AMBER Archive (2009)

Subject: [AMBER] extract frames from a .mdcrd

From: vallespardojl_at_chem.leidenuniv.nl
Date: Fri Feb 06 2009 - 04:48:23 CST

Dear amber users,

I've made a MD job. The output file seems correct, but when I check
the final structure in the restart file with the VMD (.rst file + .top
file) there are something wrong (appears a hole in the solvatation
cubic box).
For this reason I want extract different frames from the mdcrd file.
What is the best option for made this? Can I visualize the frames
directly with ptraj? or I create a crd file with ptraj, and then I
visualize this file with VMD?

A lot of thanks,

José Luis

_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber