AMBER Archive (2009)

Subject: Re: [AMBER] parameter files for D-amino acid

From: vijayaraj_at_clri.res.in
Date: Thu Feb 05 2009 - 08:49:56 CST

There are some discussions in this forum regarding the D amino acid
incorporation into the protein. But there is no clear definition for
setting up parameters in ff99sb. Can someone give suggestion on this
regard?

> D amino acids have been tested to work properly with ff99SB, not sure
> about other parameter sets.
>
>
>
>
> On Thu, Feb 5, 2009 at 8:04 AM, Vsatheesh Patil
> <vsatheeshpatil_at_yahoo.com> wrote:
>> Dear all,
>> I want to know how to create the parameter file for D-amino
>> acid as i am working on the L and D amino acid.
>>
>>
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